install libsqlrelay-ruby python-biopython-martel mird1 med-imaging libginac-dev Building the package cache... Initializing package resolver and worker... Scheduling requested actions... Resolving possible unmet dependencies... The following packages will be installed: cdd-common [0.3.4] csh [20050313-1] ctn [3.0.6-3] ctsim [4.3.1-4] ctsim-help [4.3.1-4] fftw3 [3.0.1-11] g++ [4:3.3.5-3] g++-3.3 [1:3.3.5-13] gcc [4:3.3.5-3] gcc-3.3 [1:3.3.5-13] gdk-imlib1 [1.9.14-16.2] lesstif1 [1:0.93.94-11.4] libcln-dev [1.1.9-1] libcln3 [1.1.9-1] libgdk-pixbuf2 [0.22.0-8.1] libginac-dev [1.3.0-2] libginac1.3 [1.3.0-2] libgmp3 [4.1.4-6] libgtkimreg0 [0.1.3-2] libmdc2 [0.9.8.4-1] libminc0 [1.3-3] libmysqlclient14 [4.1.11a-4sarge8] libpng10-0 [1.0.18-1] libruby1.8 [1.8.2-7sarge6] librudiments0c102 [0.27-3] libsqlrelay-ruby [1:0.35-10] libstdc++5-3.3-dev [1:3.3.5-13] libtext-format-perl [0.52-19] libwxgtk2.4 [2.4.3.1] med-common [0.8.3] med-imaging [0.8.3] medcon [0.9.8.4-1] minc-tools [1.3-3] mird1 [1.0.7-2] mysql-common-4.1 [4.1.11a-4sarge8] netcdf-bin [3.5.0-7.1] netcdfg3 [3.5.0-7.1] paul [0.1.1-3] python-biopython-martel [1.30-2] python2.3-biopython [1.30-2] python2.3-biopython-martel [1.30-2] python2.3-egenix-mxtexttools [2.0.6-1] python2.3-egenix-mxtools [2.0.6-1] python2.3-reportlab [1.20debian-1] python2.3-xml [0.8.4-1] ruby [1.8.2-1] ruby1.8 [1.8.2-7sarge6] sfftw2 [2.1.3-16] sqlrelay [1:0.35-10] xmedcon [0.9.8.4-1] Action summary: 5 manually installed and 45 automatically installed packages will be installed Need to get 23.9MiB/23.9MiB of archives. After unpacking 81.1MiB will be used. Performing requested actions: S: running command '/usr/bin/dpkg --triggers-only -a' S: downloading: http://archive.debian.org/debian/pool/main/c/cdd/cdd-common_0.3.4_all.deb S: downloading: http://archive.debian.org/debian/pool/main/d/debian-med/med-common_0.8.3_all.deb S: downloading: http://archive.debian.org/debian/pool/main/c/csh/csh_20050313-1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/c/ctsim/ctsim-help_4.3.1-4_all.deb S: downloading: http://archive.debian.org/debian/pool/main/f/fftw3/fftw3_3.0.1-11_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/g/gcc-3.3/gcc-3.3_3.3.5-13_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/g/gcc-3.3/g++-3.3_3.3.5-13_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/g/gcc-3.3/libstdc++5-3.3-dev_3.3.5-13_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/g/gcc-defaults/gcc_3.3.5-3_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/g/gcc-defaults/g++_3.3.5-3_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/l/lesstif1-1/lesstif1_0.93.94-11.4_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/g/gmp/libgmp3_4.1.4-6_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/c/cln/libcln3_1.1.9-1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/c/cln/libcln-dev_1.1.9-1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/g/ginac/libginac1.3_1.3.0-2_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/g/ginac/libginac-dev_1.3.0-2_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/x/xmedcon/libmdc2_0.9.8.4-1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/x/xmedcon/medcon_0.9.8.4-1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/libp/libpng/libpng10-0_1.0.18-1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/w/wxwindows2.4/libwxgtk2.4_2.4.3.1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/i/imlib+png2/gdk-imlib1_1.9.14-16.2_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/libg/libgtkimreg/libgtkimreg0_0.1.3-2_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/g/gdk-pixbuf/libgdk-pixbuf2_0.22.0-8.1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/x/xmedcon/xmedcon_0.9.8.4-1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/r/ruby1.8/libruby1.8_1.8.2-7sarge6_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/r/ruby1.8/ruby1.8_1.8.2-7sarge6_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/r/ruby-defaults/ruby_1.8.2-1_all.deb S: downloading: http://archive.debian.org/debian/pool/main/libr/librudiments0/librudiments0c102_0.27-3_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/s/sqlrelay/sqlrelay_0.35-10_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/s/sqlrelay/libsqlrelay-ruby_0.35-10_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/libt/libtext-format-perl/libtext-format-perl_0.52-19_all.deb S: downloading: http://archive.debian.org/debian/pool/main/m/mird/mird1_1.0.7-2_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/m/mysql-dfsg-4.1/mysql-common-4.1_4.1.11a-4sarge8_all.deb S: downloading: http://archive.debian.org/debian/pool/main/m/mysql-dfsg-4.1/libmysqlclient14_4.1.11a-4sarge8_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/c/ctn/ctn_3.0.6-3_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/c/ctsim/ctsim_4.3.1-4_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/n/netcdf/netcdfg3_3.5.0-7.1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/m/minc/libminc0_1.3-3_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/n/netcdf/netcdf-bin_3.5.0-7.1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/m/minc/minc-tools_1.3-3_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/e/egenix-mx-base/python2.3-egenix-mxtools_2.0.6-1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/e/egenix-mx-base/python2.3-egenix-mxtexttools_2.0.6-1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/p/python-xml/python2.3-xml_0.8.4-1_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/p/python-reportlab/python2.3-reportlab_1.20debian-1_all.deb S: downloading: http://archive.debian.org/debian/pool/main/p/python-biopython/python2.3-biopython_1.30-2_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/p/python-biopython/python2.3-biopython-martel_1.30-2_all.deb S: downloading: http://archive.debian.org/debian/pool/main/p/python-biopython/python-biopython-martel_1.30-2_all.deb S: downloading: http://archive.debian.org/debian/pool/main/f/fftw/sfftw2_2.1.3-16_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/p/paul/paul_0.1.1-3_i386.deb S: downloading: http://archive.debian.org/debian/pool/main/d/debian-med/med-imaging_0.8.3_all.deb S: running command '/usr/sbin/dpkg-preconfigure --apt || true' with the input -8<- /home/cbse/var/cache/apt/archives/cdd-common_0.3.4_all.deb /home/cbse/var/cache/apt/archives/med-common_0.8.3_all.deb /home/cbse/var/cache/apt/archives/csh_20050313-1_i386.deb /home/cbse/var/cache/apt/archives/ctsim-help_4.3.1-4_all.deb /home/cbse/var/cache/apt/archives/fftw3_3.0.1-11_i386.deb /home/cbse/var/cache/apt/archives/gcc-3.3_1:3.3.5-13_i386.deb /home/cbse/var/cache/apt/archives/g++-3.3_1:3.3.5-13_i386.deb /home/cbse/var/cache/apt/archives/libstdc++5-3.3-dev_1:3.3.5-13_i386.deb /home/cbse/var/cache/apt/archives/gcc_4:3.3.5-3_i386.deb /home/cbse/var/cache/apt/archives/g++_4:3.3.5-3_i386.deb /home/cbse/var/cache/apt/archives/lesstif1_1:0.93.94-11.4_i386.deb /home/cbse/var/cache/apt/archives/libgmp3_4.1.4-6_i386.deb /home/cbse/var/cache/apt/archives/libcln3_1.1.9-1_i386.deb /home/cbse/var/cache/apt/archives/libcln-dev_1.1.9-1_i386.deb /home/cbse/var/cache/apt/archives/libginac1.3_1.3.0-2_i386.deb /home/cbse/var/cache/apt/archives/libginac-dev_1.3.0-2_i386.deb /home/cbse/var/cache/apt/archives/libmdc2_0.9.8.4-1_i386.deb /home/cbse/var/cache/apt/archives/medcon_0.9.8.4-1_i386.deb /home/cbse/var/cache/apt/archives/libpng10-0_1.0.18-1_i386.deb /home/cbse/var/cache/apt/archives/libwxgtk2.4_2.4.3.1_i386.deb /home/cbse/var/cache/apt/archives/gdk-imlib1_1.9.14-16.2_i386.deb /home/cbse/var/cache/apt/archives/libgtkimreg0_0.1.3-2_i386.deb /home/cbse/var/cache/apt/archives/libgdk-pixbuf2_0.22.0-8.1_i386.deb /home/cbse/var/cache/apt/archives/xmedcon_0.9.8.4-1_i386.deb /home/cbse/var/cache/apt/archives/libruby1.8_1.8.2-7sarge6_i386.deb /home/cbse/var/cache/apt/archives/ruby1.8_1.8.2-7sarge6_i386.deb /home/cbse/var/cache/apt/archives/ruby_1.8.2-1_all.deb /home/cbse/var/cache/apt/archives/librudiments0c102_0.27-3_i386.deb /home/cbse/var/cache/apt/archives/sqlrelay_1:0.35-10_i386.deb /home/cbse/var/cache/apt/archives/libsqlrelay-ruby_1:0.35-10_i386.deb /home/cbse/var/cache/apt/archives/libtext-format-perl_0.52-19_all.deb /home/cbse/var/cache/apt/archives/mird1_1.0.7-2_i386.deb /home/cbse/var/cache/apt/archives/mysql-common-4.1_4.1.11a-4sarge8_all.deb /home/cbse/var/cache/apt/archives/libmysqlclient14_4.1.11a-4sarge8_i386.deb /home/cbse/var/cache/apt/archives/ctn_3.0.6-3_i386.deb /home/cbse/var/cache/apt/archives/ctsim_4.3.1-4_i386.deb /home/cbse/var/cache/apt/archives/netcdfg3_3.5.0-7.1_i386.deb /home/cbse/var/cache/apt/archives/libminc0_1.3-3_i386.deb /home/cbse/var/cache/apt/archives/netcdf-bin_3.5.0-7.1_i386.deb /home/cbse/var/cache/apt/archives/minc-tools_1.3-3_i386.deb /home/cbse/var/cache/apt/archives/python2.3-egenix-mxtools_2.0.6-1_i386.deb /home/cbse/var/cache/apt/archives/python2.3-egenix-mxtexttools_2.0.6-1_i386.deb /home/cbse/var/cache/apt/archives/python2.3-xml_0.8.4-1_i386.deb /home/cbse/var/cache/apt/archives/python2.3-reportlab_1.20debian-1_all.deb /home/cbse/var/cache/apt/archives/python2.3-biopython_1.30-2_i386.deb /home/cbse/var/cache/apt/archives/python2.3-biopython-martel_1.30-2_all.deb /home/cbse/var/cache/apt/archives/python-biopython-martel_1.30-2_all.deb /home/cbse/var/cache/apt/archives/sfftw2_2.1.3-16_i386.deb /home/cbse/var/cache/apt/archives/paul_0.1.1-3_i386.deb /home/cbse/var/cache/apt/archives/med-imaging_0.8.3_all.deb ->8- S: marking as automatically installed: cdd-common S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/cdd-common_0.3.4_all.deb' S: marking as automatically installed: med-common S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/med-common_0.8.3_all.deb' S: marking as automatically installed: csh S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/csh_20050313-1_i386.deb' S: marking as automatically installed: ctsim-help S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/ctsim-help_4.3.1-4_all.deb' S: marking as automatically installed: fftw3 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/fftw3_3.0.1-11_i386.deb' S: marking as automatically installed: gcc-3.3 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/gcc-3.3_1:3.3.5-13_i386.deb' S: marking as automatically installed: g++-3.3 S: running command '/usr/bin/dpkg --unpack --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/g++-3.3_1:3.3.5-13_i386.deb' S: marking as automatically installed: libstdc++5-3.3-dev S: running command '/usr/bin/dpkg --unpack --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libstdc++5-3.3-dev_1:3.3.5-13_i386.deb' S: running command '/usr/bin/dpkg --configure --no-triggers --force-bad-path libstdc++5-3.3-dev g++-3.3' S: marking as automatically installed: gcc S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/gcc_4:3.3.5-3_i386.deb' S: marking as automatically installed: g++ S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/g++_4:3.3.5-3_i386.deb' S: marking as automatically installed: lesstif1 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/lesstif1_1:0.93.94-11.4_i386.deb' S: marking as automatically installed: libgmp3 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libgmp3_4.1.4-6_i386.deb' S: marking as automatically installed: libcln3 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libcln3_1.1.9-1_i386.deb' S: marking as automatically installed: libcln-dev S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libcln-dev_1.1.9-1_i386.deb' S: marking as automatically installed: libginac1.3 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libginac1.3_1.3.0-2_i386.deb' S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libginac-dev_1.3.0-2_i386.deb' S: marking as automatically installed: libmdc2 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libmdc2_0.9.8.4-1_i386.deb' S: marking as automatically installed: medcon S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/medcon_0.9.8.4-1_i386.deb' S: marking as automatically installed: libpng10-0 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libpng10-0_1.0.18-1_i386.deb' S: marking as automatically installed: libwxgtk2.4 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libwxgtk2.4_2.4.3.1_i386.deb' S: marking as automatically installed: gdk-imlib1 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/gdk-imlib1_1.9.14-16.2_i386.deb' S: marking as automatically installed: libgtkimreg0 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libgtkimreg0_0.1.3-2_i386.deb' S: marking as automatically installed: libgdk-pixbuf2 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libgdk-pixbuf2_0.22.0-8.1_i386.deb' S: marking as automatically installed: xmedcon S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/xmedcon_0.9.8.4-1_i386.deb' S: marking as automatically installed: libruby1.8 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libruby1.8_1.8.2-7sarge6_i386.deb' S: marking as automatically installed: ruby1.8 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/ruby1.8_1.8.2-7sarge6_i386.deb' S: marking as automatically installed: ruby S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/ruby_1.8.2-1_all.deb' S: marking as automatically installed: librudiments0c102 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/librudiments0c102_0.27-3_i386.deb' S: marking as automatically installed: sqlrelay S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/sqlrelay_1:0.35-10_i386.deb' S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libsqlrelay-ruby_1:0.35-10_i386.deb' S: marking as automatically installed: libtext-format-perl S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libtext-format-perl_0.52-19_all.deb' S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/mird1_1.0.7-2_i386.deb' S: marking as automatically installed: mysql-common-4.1 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/mysql-common-4.1_4.1.11a-4sarge8_all.deb' S: marking as automatically installed: libmysqlclient14 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libmysqlclient14_4.1.11a-4sarge8_i386.deb' S: marking as automatically installed: ctn S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/ctn_3.0.6-3_i386.deb' S: marking as automatically installed: ctsim S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/ctsim_4.3.1-4_i386.deb' S: marking as automatically installed: netcdfg3 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/netcdfg3_3.5.0-7.1_i386.deb' S: marking as automatically installed: libminc0 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/libminc0_1.3-3_i386.deb' S: marking as automatically installed: netcdf-bin S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/netcdf-bin_3.5.0-7.1_i386.deb' S: marking as automatically installed: minc-tools S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/minc-tools_1.3-3_i386.deb' S: marking as automatically installed: python2.3-egenix-mxtools S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/python2.3-egenix-mxtools_2.0.6-1_i386.deb' S: marking as automatically installed: python2.3-egenix-mxtexttools S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/python2.3-egenix-mxtexttools_2.0.6-1_i386.deb' S: marking as automatically installed: python2.3-xml S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/python2.3-xml_0.8.4-1_i386.deb' S: marking as automatically installed: python2.3-reportlab S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/python2.3-reportlab_1.20debian-1_all.deb' S: marking as automatically installed: python2.3-biopython S: running command '/usr/bin/dpkg --unpack --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/python2.3-biopython_1.30-2_i386.deb' S: marking as automatically installed: python2.3-biopython-martel S: running command '/usr/bin/dpkg --unpack --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/python2.3-biopython-martel_1.30-2_all.deb' S: running command '/usr/bin/dpkg --configure --no-triggers --force-bad-path python2.3-biopython-martel python2.3-biopython' S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/python-biopython-martel_1.30-2_all.deb' S: marking as automatically installed: sfftw2 S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/sfftw2_2.1.3-16_i386.deb' S: marking as automatically installed: paul S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/paul_0.1.1-3_i386.deb' S: running command '/usr/bin/dpkg --install --no-triggers --force-bad-path /home/cbse/var/cache/apt/archives/med-imaging_0.8.3_all.deb' S: running command '/usr/bin/dpkg --triggers-only --pending'